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Estimating Wildlife Disease Dynamics in Complex Systems Using an Approximate Bayesian Computation Framework.

Ecological Applications(2016)SCI 2区

Univ Minnesota

Cited 21|Views39
Abstract
Emerging infectious diseases of wildlife are of increasing concern to managers and conservation policy makers, but are often difficult to study and predict due to the complexity of host–disease systems and a paucity of empirical data. We demonstrate the use of an Approximate Bayesian Computation statistical framework to reconstruct the disease dynamics of bovine tuberculosis in Kruger National Park's lion population, despite limited empirical data on the disease's effects in lions. The modeling results suggest that, while a large proportion of the lion population will become infected with bovine tuberculosis, lions are a spillover host and long disease latency is common. In the absence of future aggravating factors, bovine tuberculosis is projected to cause a lion population decline of ~3% over the next 50 years, with the population stabilizing at this new equilibrium. The Approximate Bayesian Computation framework is a new tool for wildlife managers. It allows emerging infectious diseases to be modeled in complex systems by incorporating disparate knowledge about host demographics, behavior, and heterogeneous disease transmission, while allowing inference of unknown system parameters.
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African buffalo,Syncerus caffer,Approximate Bayesian Computation,ABC,bovine tuberculosis,bTB,disease modeling,emerging disease,Kruger National Park,South Africa,lion,Panthera leo,multi-host system,Mycobacterium bovis,wildlife epidemiology
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要点】:本文提出使用近似贝叶斯计算框架来估计复杂系统中野生动物疾病动态,并以克鲁格国家公园狮子群体中的牛结核病为例,展示了该框架的有效性。

方法】:作者采用近似贝叶斯计算(Approximate Bayesian Computation,ABC)框架来重建疾病动态模型,此方法可以在缺乏充足实证数据的情况下,结合宿主 demographics、行为以及异质性疾病传播的知识,推断未知系统参数。

实验】:研究以克鲁格国家公园狮子群体中的牛结核病为例进行实验,使用近似贝叶斯计算框架对疾病动态进行建模,结果显示尽管狮子中会有大量个体感染牛结核病,但它们是溢出宿主,且疾病潜伏期长。在没有未来加剧因素的情况下,预计牛结核病将导致狮子种群在接下来的50年内下降约3%,并在此水平达到新的平衡。实验中未明确提及具体的数据集名称。