Spatio-Temporal Dynamics of crAssphage and Bacterial Communities in an Algerian Watershed Impacted by Fecal Pollution

This study investigates the influence of urban pollution and climate dynamics on water quality and the bacterial communities in an Argelian watershed. Twenty-one sampling campaigns were conducted over two years at six sites along the Oued Boussellam, a river impacted by the effluent of a sewage treatment plant, from a low-polluted site to a water reservoir within a 50 km distance. Fecal indicators and the human fecal marker crAssphage were monitored. Illumina 16S rRNA amplicon sequencing was used to assess water microbial populations’ changes. Urban sewage discharge had an impact on the river quality and microbial ecosystem, which was attenuated along the river course. Significant reductions (>4 log10 for E. coli and somatic coliphages, >3 log10 for crAssphage) occurred, particularly during high-temperature periods. crAssphage correlated strongly with somatic coliphages downstream the river. Seasonal differences were observed in the diversity of the bacterial communities, with higher values during the high-temperature period. The genus-level community structure was similar at highly polluted river sites, also displaying seasonal differences. Despite high pollution levels, natural processes reduced fecal indicators to acceptable levels in the reservoir as well as shaped the bacterial communities along the river, highlighting the importance of understanding indicator persistence and microbial community resilience for effective water quality management within the context of the global warming scenario.