Molecular Insights into the Inhibitory Role of -Crystallin against D-Crystallin Aggregation

Cataracts, a major cause of global blindness, contribute significantly to the overall prevalence of blindness. The opacification of the lens, resulting in cataract formation, primarily occurs due to the aggregation of crystallin proteins within the eye lens. Despite the high concentration of these crystallins, they remarkably maintain the lens transparency and refractive index. alpha-Crystallins (alpha-crys), acting as chaperones, play a crucial role in preventing crystallin aggregation, although the exact molecular mechanism remains uncertain. In this study, we employed a combination of molecular docking, all-atom molecular dynamics simulations, and advanced free energy calculations to investigate the interaction between gamma D-crystallin (gamma D-crys), a major structural protein of the eye lens, and alpha-crystallin proteins. Our findings demonstrate that alpha-crys exhibits an enhanced affinity for the NTD2 and CTD4 regions of gamma D-crys. The NTD2 and CTD4 regions form the interface between the N-terminal domain (NTD) and the C-terminal domain (CTD) of the gamma D-crys protein. By binding to the interface region between the NTD and CTD of the protein, alpha-crys effectively inhibits the formation of domain-swapped aggregates and mitigates protein aggregation. Analysis of the Markov state models using molecular dynamics trajectories confirms that minimum free energy conformations correspond to the binding of the alpha-crystallin domain (ACD) of alpha-crys to NTD2 and CTD4 that form the interdomain interface.