Identification of Key Genes and Pathways in Ulcerative Colitis Through Bioinformatics Analysis

Abstract Background Ulcerative colitis (UC) is a chronic inflammatory disease whose therapy remains largely uncertain due to the lack of etiological understanding. It is also a higher risk factor for colon cancer. Aims This study was designed to identify key genes correlated with intestinal epithelial repair and their associated signaling pathways in the pathogenesis and malignant transformation of UC.Methods With an online database pubmed2ensemble, correlative genes were identified to be associated with both UC and its self-healing, and then were imported in Cytoscape for enrichment analysis. A protein-protein interaction network containing was established, and the most significant gene modules and top ten hub genes were selected for further enrichment analysis. Then, potential drugs that target the corresponding genes were identified with online tool in DGIdb. A map which reflected the links among genes, drugs, and their associated pathways was constructed. Finally, we searched the TCGA database and CPTAC database for testing the gene expression of identified UC-associated genes in colon cancer.Results We identified FN1, GRB2, EGF, CXCL8, VEGFA, STAT3, IL6, IL4, IL10, TNF, CSF2, IL13, IL1A, CCL2, ICAM1 and IL18 had closest associations with the function of epithelial function in UC patients, based on functional enrichment analysis. Besides, 11 of them were validated in colon cancer. Conclusions The corresponding signaling pathways that are altered in UC, which provide a new clue for understanding the mechanism underlying the UC pathogenesis and malignant transformation. Key signals in the process and their target drugs might serve as new treatment strategy for UC.