Extreme Niche Partitioning and Microbial Dark Matter in a Mauna Loa Lava Tube

Lava tubes are key targets in the search for life on Mars. Their basaltic walls provide protection from radiation and changing environmental conditions, which could enable life or preservation of previous life in an otherwise harsh environment. We can understand the potential for Martian life in lava tubes by studying the habitability of analog environments on Earth. In this study, we present the first characterization of the microbial life inside a pristine Mauna Loa lava tube. This study is the first to combine 16S SSU rRNA sequencing and whole genome shotgun sequencing to map the taxonomic makeup and functional potential of any lava tube community in Hawaii, enabling a deep understanding of the types of microbes that thrive in this unique environment and the metabolisms they use. We find a surprisingly high degree of niche partitioning over small spatial scales and discuss implications for life detection strategies. Based on recent bioinformatic advancements in metagenomics, we also assemble dozens of high-quality metagenome assembled genomes from the microbes living in the lava tubes, including several novel species.