Genetic justification of COVID-19 patient outcomes using DERGA, a novel data ensemble refinement greedy algorithm

Panagiotis G. Asteris,Amir H. Gandomi, Danial J. Armaghani, Markos Z. Tsoukalas,Eleni Gavriilaki,Gloria Gerber, Gerasimos Konstantakatos, Athanasia D. Skentou, Leonidas Triantafyllidis, Nikolaos Kotsiou,Evan Braunstein,Hang Chen, Robert Brodsky,Tasoula Touloumenidou,Ioanna Sakellari,Nizar Faisal Alkayem,Abidhan Bardhan,Maosen Cao,Liborio Cavaleri,Antonio Formisano, Deniz Guney,Mahdi Hasanipanah,Manoj Khandelwal, Ahmed Salih Mohammed,Pijush Samui,Jian Zhou,Evangelos Terpos,Meletios A. Dimopoulos

JOURNAL OF CELLULAR AND MOLECULAR MEDICINE(2024)

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摘要
Complement inhibition has shown promise in various disorders, including COVID-19. A prediction tool including complement genetic variants is vital. This study aims to identify crucial complement-related variants and determine an optimal pattern for accurate disease outcome prediction. Genetic data from 204 COVID-19 patients hospitalized between April 2020 and April 2021 at three referral centres were analysed using an artificial intelligence-based algorithm to predict disease outcome (ICU vs. non-ICU admission). A recently introduced alpha-index identified the 30 most predictive genetic variants. DERGA algorithm, which employs multiple classification algorithms, determined the optimal pattern of these key variants, resulting in 97% accuracy for predicting disease outcome. Individual variations ranged from 40 to 161 variants per patient, with 977 total variants detected. This study demonstrates the utility of alpha-index in ranking a substantial number of genetic variants. This approach enables the implementation of well-established classification algorithms that effectively determine the relevance of genetic variants in predicting outcomes with high accuracy.
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关键词
artificial intelligence,classification algorithms,COVID-19,DERGA,genetic,SARS-CoV2,variants
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