Two Color Single Molecule Sequencing on GenoCare™ 1600 Platform to Facilitate Clinical Applications

Fang Chen,Bin Liu, Meirong Chen, Zefei Jiang,Zhiliang Zhou,Ping Wu, Meng Zhang,Huan Jin,Linsen Li,Liuyan Lu,Qi Wang,Huan Shang, Bing Xie,Lei Liu,Xia Lin,Weiyue Chen,Jianfeng Xu, Ruitao Sun, Guangming Wang,Jiao Zheng, Jifang Qi, Bo Yang, Dexia Chen,Lidong Zeng,Gailing Li,Yan Li,Hui Lv, Nannan Zhao,Bo Zhou,Wen Wang,Jinsen Cai,Siyu Liu,Weiwei Luo, Juan Zhang, Yanhua Zhang, Yongyi Lu, Jicai Fan, Haitao Dan,Xuesen He,Lichun Liu,Yan Feng,Jianglin Chen,Wei Huang,Lei Sun,Qin Yan

medrxiv(2020)

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摘要
With the rapid development of precision medicine industry, DNA sequencing becomes increasingly important as a research and diagnosis tool. For clinical applications, medical professionals require a platform which is fast, easy to use, and presents clear information relevant to definitive diagnosis. We have developed a single molecule desktop sequencing platform, GenoCare™ 1600. Fast library preparation (without amplification) and simple instrument operation make it friendlier for clinical use. Here we presented sequencing data of E. coli sample from GenoCare™ 1600 with consensus accuracy reaches 99.99%. We also demonstrated sequencing of microbial mixtures and COVID-19 samples from throat swabs. Our data show accurate quantitation of microbial, sensitive identification of SARS-CoV-2 virus and detection of variants confirmed by Sanger sequencing. ### Competing Interest Statement The authors declare competing financial interests: all authors are employees or contractors that work for GeneMind Biosciences Company Limited. ### Funding Statement All authors are employees of GeneMind Biosciences Company Limited. No external funding was received. ### Author Declarations I confirm all relevant ethical guidelines have been followed, and any necessary IRB and/or ethics committee approvals have been obtained. Yes The details of the IRB/oversight body that provided approval or exemption for the research described are given below: The Ethics Committee of GeneMind Biosciences Company Limited All necessary patient/participant consent has been obtained and the appropriate institutional forms have been archived. Yes I understand that all clinical trials and any other prospective interventional studies must be registered with an ICMJE-approved registry, such as ClinicalTrials.gov. I confirm that any such study reported in the manuscript has been registered and the trial registration ID is provided (note: if posting a prospective study registered retrospectively, please provide a statement in the trial ID field explaining why the study was not registered in advance). Yes I have followed all appropriate research reporting guidelines and uploaded the relevant EQUATOR Network research reporting checklist(s) and other pertinent material as supplementary files, if applicable. Yes Supplementary material is submitted as "Supplementary Information-Two Color Single Molecule Sequencing on Genocare 1600 Platform to Facilitate Clinical Applications.pdf".
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