Calcium-dependent strength of the inner-ear cadherin-23 ectodomain

Cadherin proteins are essential for multicellular organisms and are involved in multiple processes including calcium-dependent cell-cell adhesion and inner-ear mechanotransduction. Cadherin-23 is an integral component of a fibrous protein filament, called the tip link, that is ultimately responsible for converting the mechanical energy of sound into the opening and closing of a gated ion channel that triggers signaling through the auditory nerve. Proper functioning of the tip link depends on its mechanical strength, which is stabilized by interactions of calcium ions with nearby protein residues at discrete triplet binding sites between extracellular cadherin (EC) repeats or so-called linker regions. These binding sites have varying affinity for calcium occupancy, and different calcium configurations at a linker region increase the mechanical rigidity of the tip link to varying degrees. Here we examine the mechanical strength of cadherin-23 repeats across an ensemble of calcium occupancy states at sites labeled as site1, site2, and site3 (ordered by increasing Kd). We do this through a combination of all-atom steered molecular dynamics simulations and by constructing probability distributions for a configuration ensemble which we analyze by Markov chain Monte Carlo. Simulations predict an increase in the tip link's mechanical strength according to an increase in the number of occupied calcium-binding sites. Surprisingly, our analyses also reveal that for the range of cochlear calcium concentration (20 to 50 uM), the most likely configuration involved a single calcium ion at site3, followed by two calcium ions at site2 and site3, then three calcium ions across all sites, and lastly an empty linker region. We discuss these results in the context of tip-link mediated inner ear mechanotransduction.