Withanolides of Athenaea velutina with potential inhibitory properties against SARS coronavirus main protease (m pro ): molecular modeling studies.

Journal of biomolecular structure & dynamics(2023)

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摘要
Since the global COVID-19 pandemic began, the scientific community has dedicated efforts to finding effective antiviral drugs to treat or minimize the effects caused by the SARS-CoV-2 coronavirus. Some targets can act as inhibitor substrates, highlighting the Main Protease (M), which plays an essential role in the translation and transcription of the virus cycle. Withanolides, a class of natural C steroidal lactones, are compounds of interest as possible inhibitors of M and other critical targets of the virus, such as papain-like protease. In this study, the isolation of a new withanolide (), along with the known 27-deoxywithaferin A () and 27-deoxy-2,3-dihydrowithaferin A (), from the leaves of (Solanaceae) is described. Their structures were determined using spectroscopic and spectrometric methods (NMR, IR, HRESIMS). Moreover, the interaction and the stability of withanolides - and withanolide D (), previously isolated of , against the M target through molecular docking, molecular dynamics, and binding free energy simulations were analyzed. The molecular dynamics results indicated that the complexes formed by the molecular docking simulations between the M target with each of the withanolides - exhibited good stability during the simulations due to a slight change in the structure of complexes. The binding free energy results suggested that withanolide () can be a natural candidate against COVID-19 disease. Communicated by Ramaswamy H. Sarma.
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关键词
Athenaea velutina,COVID-19,Mpro,molecular docking,molecular dynamics,withanolides
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