Teaching Mathematical Modeling of Cellular Systems with the VCell MathModel

Mathematical biology has emerged as a powerful approach to describe and understand biological systems. Here, we introduce an interactive teaching tool with a practical hands-on skill session plan to introduce students to the various components of a mathematical model with 4 different mathematical approaches (i.e., ordinary differential equations, partial differential equations, stochastic differential equations, and spatial stochastic differential equations) and their advantages and disadvantages. As such, we provide a didactic summary for instructors and students interested in using VCell MathModels for mathematical modeling; this work is also valuable for mathematics-savvy users who would like to exploit fully the capabilities of the VCell software.