Maximal ancestral graph structure learning via exact search.

Generalizing Bayesian networks, maximal ancestral graphs (MAGs) are a theoretically appealing model class for dealing with unobserved variables. Despite significant advances in developing practical exact algorithms for learning score-optimal Bayesian networks, practical exact algorithms for learning score-optimal MAGs have not been developed to-date. We develop here methodology for score-based structure learning of directed maximal ancestral graphs. In particular, we develop local score computation employing a linear Gaussian BIC score, as well as score pruning techniques, which are essential for exact structure learning approaches. Furthermore, employing dynamic programming and branch and bound, we present a first exact search algorithm that is guaranteed to find a globally optimal MAG for given local scores. The experiments show that our approach is able to find considerably higher scoring MAGs than previously proposed in-exact approaches.