The Ligon lintless-2 short fiber mutation is located within a terminal deletion of chromosome 18 in cotton.

Extreme elongation distinguishes about one-fourth of cotton (Gossypium sp.) seed epidermal cells as "lint" fibers, useful for the textile industry, from "fuzz" fibers (<5 mm). Ligon lintless-2 (Li-2), a dominant mutation that results in no lint fiber but normal fuzz fiber, offers insight into pathways and mechanisms that differentiate spinnable cotton from its progenitors. A genetic map developed using 1,545 F2 plants showed that marker CISP15 was 0.4 cM from Li-2, and "dominant" simple sequence repeat (SSR) markers (i.e. with null alleles in the Li-2 genotype) SSR7 and SSR18 showed complete linkage with Li-2. Nonrandom distribution of markers with null alleles suggests that the Li-2 phenotype results from a 176- to 221-kb deletion of the terminal region of chromosome 18 that may have been masked in prior pooled-sample mapping strategies. The deletion includes 10 genes with putative roles in fiber development. Two Glycosyltransferase Family 1 genes showed striking expression differences during elongation of wild-type versus Li-2 fiber, and virus-induced silencing of these genes in the wild type induced Li-2-like phenotypes. Further, at least 7 of the 10 putative fiber development genes in the deletion region showed higher expression in the wild type than in Li-2 mutants during fiber development stages, suggesting coordinated regulation of processes in cell wall development and cell elongation, consistent with the hypothesis that some fiber-related quantitative trait loci comprise closely spaced groups of functionally diverse but coordinately regulated genes. Fine mapping and functional validation of the Ligon lintless-2 (Li-2) fiber mutant elucidates the genetics and development of one of the longest single-celled fibers.