BioSimulator.jl: Stochastic simulation in Julia.

Computer Methods and Programs in Biomedicine(2018)

Cited 15|Views25
No score
Abstract
•This work highlights BioSimulator.jl, an open-source master equation simulation engine implemented in the Julia language.•We highlight the comparative strengths of the exact and approximate stochastic simulation algorithms provided by our software.•Stochastic simulation finds applications across disciplines, including ecology, chemistry, and genetics. We illustrate BioSimulator.jl’s workflow and utility with examples.•Our benchmarks favor a Julia implementation: BioSimulator.jl provides code readability and ease-of-use without sacrificing performance.
More
Translated text
Key words
Stochastic simulation,Gillespie algorithm,τ-leaping,Systems biology,Julia language
AI Read Science
Must-Reading Tree
Example
Generate MRT to find the research sequence of this paper
Chat Paper
Summary is being generated by the instructions you defined