Tachyon search speeds up retrieval of similar sequences by several orders of magnitude.

BIOINFORMATICS(2012)

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摘要
The usage of current sequence search tools becomes increasingly slower as databases of protein sequences continue to grow exponentially. Tachyon, a new algorithm that identifies closely related protein sequences ~200 times faster than standard BLAST, circumvents this limitation with a reduced database and oligopeptide matching heuristic.The tool is publicly accessible as a webserver at http://tachyon.bii.a-star.edu.sg and can also be accessed programmatically through SOAP.
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关键词
related protein sequence,accessed programmatically,bioinformatics online,current sequence search tool,tachyon search speed,sg supplementary information,oligopeptide matching heuristic,reduced database,standard blast,similar sequence,new algorithm,protein sequence,algorithms,internet,search engine,amino acid sequence
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