Scoary2: rapid association of phenotypic multi-omics data with microbial pan-genomes

Thomas Roder,Grégory Pimentel,Pascal Fuchsmann,Mireille Tena Stern,Ueli von Ah,Guy Vergères,Stephan Peischl,Ola Brynildsrud,Rémy Bruggmann,Cornelia Bär

Genome Biology（2024）

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摘要

Unraveling bacterial gene function drives progress in various areas, such as food production, pharmacology, and ecology. While omics technologies capture high-dimensional phenotypic data, linking them to genomic data is challenging, leaving 40–60

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关键词

Prokaryote,Bacteria,Pan-genome,Metabolite,Microbial genome-wide association studies,GWAS,BGWA,Genotype-phenotype association,Fermented food,Omics

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