Omadacycline dihydrate, C29H40N4O7?2H2O, from X-ray powder diffraction data

ACTA CRYSTALLOGRAPHICA SECTION E-CRYSTALLOGRAPHIC COMMUNICATIONS(2024)

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摘要
The crystal structure of the title compound {systematic name: (4S,4aS,5aR,12aR)-4,7-bis(dimethylamino)-9-[(2,2-dimethylpropylamino)methyl]-1,10,11,12a-tetrahydroxy-3,12-dioxo-4a, 5,5a,6-tetrahydro-4H-tetracene-2-carboxamide dihydrate, C29H40N4O7 center dot 2H(2)O} has been solved and refined using synchrotron X-ray powder diffraction data: it crystallizes in space group R3 with a = 24.34430 (7), c = 14.55212 (4) angstrom, V = 7468.81 (2) angstrom(3) and Z = 9. Most of the hydrogen bonds are intramolecular, but two classical N-H...O intermolecular hydrogen bonds (along with probable weak C-H center dot center dot center dot O and C-H center dot center dot center dot N hydrogen bonds) link the molecules into a three-dimensional framework. The framework contains voids, which contain disordered water molecules. Keto-enol tautomerism is apparently important in this molecule, and the exact molecular structure is ambiguous.
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关键词
powder diffraction,omadacycline,Nuzyra,Rietveld refinement
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