Prolog Meets Biology
Lecture Notes in Computer Science(2023)
摘要
This paper provides an overview of the use of Prolog and its derivatives to sustain research and development in the fields of bioinformatics and computational biology. A number of applications in this domain have been enabled by the declarative nature of Prolog and the combinatorial nature of the underlying problems. The paper provides a summary of some relevant applications as well as potential directions that the Prolog community can continue to pursue in this important domain. The presentation is organized in two parts: “small,” which explores studies in biological components and systems, and “large,” that discusses the use of Prolog to handle biomedical knowledge and data. A concrete encoding example is presented and the effective implementation in Prolog of a widely used approximated search technique, large neighborhood search, is presented.
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关键词
prolog,biology
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