Space Efficient Sequence Alignment for SRAM-Based Computing: X-Drop on the Graphcore IPU
CoRR（2023）
关键词
Sequence Alignment,Heuristic,Search Space,Graphics Processing Unit,Pairwise Alignment,Load Balancing,Hardware Accelerators,Alignment Problem,Strong Scaling,Sequence Length,Parallelization,Real-world Data,Local Alignment,Sparse Matrix,Upper Left Corner,Work Unit,Local Memory,Long-read Technologies,Dynamic Matrix,Single Tile,Anti-diagonal,Optimal Alignment,Entire Matrix,Total Execution Time,Graph Partitioning,Race Conditions,Single Alignment,Clock Frequency
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