Transformer-Based Integrated Framework for Joint Reconstruction and Segmentation in Accelerated Knee MRI

Magnetic Resonance Imaging (MRI) reconstruction and segmentation are crucial for medical diagnostics and treatment planning. Despite advances, achieving high performance in both tasks remains challenging, especially in the context of accelerated MRI acquisition. Motivated by this challenge, the objective of this study is to develop an integrated approach for MRI image reconstruction and segmentation specifically tailored for accelerated acquisition scenarios. The proposed method unifies these tasks by incorporating segmentation feedback into an iterative reconstruction algorithm and using a transformer-based encoder-decoder architecture. This architecture consists of a shared encoder and task-specific decoders, and employs a feature distillation process between the decoders. The proposed model is evaluated on the Stanford Knee MRI with Multi-Task Evaluation (SKM-TEA) dataset against established methods such as SegNetMRI and IDSLR-Seg. The results show improvements in the PSNR, SSIM, Dice, and Hausdorff distance metrics. An ablation study confirms the contribution of feature distillation and segmentation feedback to the performance gains. The advancements demonstrated in this study have the potential to impact clinical practice by facilitating more accurate diagnosis and better-informed treatment plans.