Genetic diversity of Leptospira strains circulating in humans and dogs in France in 2019-2021.

Leptospirosis is a bacterial zoonotic disease. Humans and dogs are susceptible hosts, with similar clinical manifestations ranging from a febrile phase to multiple organ dysfunction. The incidence of leptospirosis in mainland France is relatively high, at about 1 case per 100,000 inhabitants, but our knowledge of the strains circulating in humans and dogs remains limited. We studied the polymorphism of the gene sequences in an exhaustive database, to facilitate the identification of strains. We identified 46 species-groups (SG) encompassing the eight pathogenic species of . We sequenced the gene amplification products from 170 biological samples collected from 2019 to 2021: 110 from humans and 60 from dogs. Epidemiological data, including vaccination status in dogs, were also collected. Three species displaying considerable diversity were identified: , with eight species-groups (including five new species-groups) in humans and dogs; , with two species-groups in humans and dogs; and , with one species-group in humans only. The species-group SG1, corresponding to serovar Icterohaemorrhagiae or Copenhageni, was frequently retrieved from both humans and dogs (67/110; 60.9% and 59/60; 98.3% respectively). A high proportion of the affected dogs developed the disease despite vaccination (30/60; 50%). Genotyping with the polymorphic gene is both robust and simple. This approach provided the first global picture of the strains responsible for acute infections in mainland France, based on biological samples but without the need for culture. Identification of the strains circulating and their changes over time will facilitate more precise epidemiological monitoring of susceptible and reservoir species. It should also facilitate the monitoring of environmental contamination, making it possible to implement preventive measures and to reduce the burden of this disease.