Genome-wide CRISPR-Cas9 screen analyzed by SLIDER identifies network of repressor complexes that regulate TRIM24.

iScience(2023)

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摘要
is an oncogenic chromatin reader that is frequently overexpressed in human tumors and associated with poor prognosis. However, is rarely mutated, duplicated, or rearranged in cancer. This raises questions about how is regulated and what changes in its regulation are responsible for its overexpression. Here, we perform a genome-wide CRISPR-Cas9 screen by fluorescence-activated cell sorting (FACS) that nominated 220 negative regulators and elucidated a regulatory network that includes the KAP1 corepressor, CNOT deadenylase, and GID/CTLH E3 ligase. Knocking out required components of these three complexes caused overexpression, confirming their negative regulation of . Our findings identify regulators of that nominate previously unexplored contexts for this oncoprotein in biology and disease. These findings were enabled by SLIDER, a new scoring system designed and vetted in our study as a broadly applicable tool for analysis of CRISPR screens performed by FACS.
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关键词
crispr/cas9 screen,repressor complexes
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