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Systematic Assessment of Long-Read RNA-seq Methods for Transcript Identification and Quantification

Francisco J. Pardo-Palacios,Dingjie Wang,Fairlie Reese,Mark Diekhans,Silvia Carbonell-Sala,Brian Williams,Jane E. Loveland,Maite De Maria,Matthew S. Adams,Gabriela Balderrama-Gutierrez,Amit K. Behera,Jose M. Gonzalez Martinez,Toby Hunt,Julien Lagarde, Cindy E. Liang,Haoran Li, Marcus Jerryd Meade,David A. Moraga Amador,Andrey D. Prjibelski,Inanc Birol,Hamed Bostan,Ashley M. Brooks,Muhammed Hasan Celik,Ying Chen,Mei R. M. Du,Colette Felton, Jonathan Goeke,Saber Hafezqorani,Ralf Herwig,Hideya Kawaji,Joseph Lee,Jian-Liang Li,Matthias Lienhard,Alla Mikheenko, Dennis Mulligan,Ka Ming Nip,Mihaela Pertea,Matthew E. Ritchie, Andre D. Sim,Alison D. Tang,Yuk Kei Wan,Changqing Wang,Brandon Y. Wong,Chen Yang,If Barnes,Andrew E. Berry,Salvador Capella-Gutierrez,Alyssa Cousineau,Namrita Dhillon, Jose M. Fernandez-Gonzalez, Luis Ferrandez-Peral,Natalia Garcia-Reyero, Stefan Goetz, Carles Hernandez-Ferrer,Liudmyla Kondratova,Tianyuan Liu, Alessandra Martinez-Martin, Carlos Menor,Jorge Mestre-Tomas,Jonathan M. Mudge, Nedka G. Panayotova,Alejandro Paniagua,Dmitry Repchevsky,Xingjie Ren,Eric Rouchka, Brandon Saint-John, Enrique Sapena, Leon Sheynkman,Melissa Laird Smith,Marie-Marthe Suner,Hazuki Takahashi,Ingrid A. Youngworth,Piero Carninci,Nancy D. Denslow,Roderic Guigo,Margaret E. Hunter,Rene Maehr,Yin Shen,Hagen U. Tilgner,Barbara J. Wold,Christopher Vollmers,Adam Frankish,Kin Fai Au,Gloria M. Sheynkman,Ali Mortazavi,Ana Conesa,Angela N. Brooks

NATURE METHODS（2024）

Cited 19|Views21
Key words
transcript quantification,Transcriptional Landscape,RNA-Seq,genome annotation,Long Noncoding RNAs
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