Accurate and fast clade assignment via deep learning and frequency chaos game representation.

Jorge Avila Cartes,Santosh Anand,Simone Ciccolella,Paola Bonizzoni,Gianluca Della Vedova

GigaScience（2022）

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摘要

The trained models can be tested online providing a FASTA file (with 1 or multiple sequences) at https://huggingface.co/spaces/BIASLab/sars-cov-2-classification-fcgr. CouGaR-g is also available at https://github.com/AlgoLab/CouGaR-g under the GPL.

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关键词

k-mer frequency,GISAID clades,SARS-CoV-2,chaos game representation,classification of genome sequences,convolutional neural networks,deep learning

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