Making Canonical Workflow Building Blocks Interoperable across Workflow Languages

DATA INTELLIGENCE(2022)

引用 1|浏览17
暂无评分
摘要
We introduce the concept of Canonical Workflow Building Blocks (CWBB), a methodology of describing and wrapping computational tools, in order for them to be utilised in a reproducible manner from multiple workflow languages and execution platforms. The concept is implemented and demonstrated with the BioExcel Building Blocks library (BioBB), a collection of tool wrappers in the field of computational biomolecular simulation. Interoperability across different workflow languages is showcased through a protein Molecular Dynamics setup transversal workflow, built using this library and run with 5 different Workflow Manager Systems (WfMS). We argue such practice is a necessary requirement for FAIR Computational Workflows and an element of Canonical Workflow Frameworks for Research (CWFR) in order to improve widespread adoption and reuse of computational methods across workflow language barriers.
更多
查看译文
关键词
Scientific workflows,Interoperable,FAIR,Computational tools,Containers,Software packaging,FAIR digital object (FDO),BioExcel Building Blocks library (BioBB),Canonical Workflow Frameworks for Research (CWFR)
AI 理解论文
溯源树
样例
生成溯源树,研究论文发展脉络
Chat Paper
正在生成论文摘要