Isolation and Characterization of vB_PagP-SK1, a T7-Like Phage Infecting Pantoea agglomerans .

PHAGE (New Rochelle, N.Y.)(2020)

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摘要
is a genus within the whose members encompass free-living and host-associated lifestyles. Despite our growing understanding of the role of mobile genetic elements in the biology, ecology, and evolution of this bacterial group, few bacteriophages have been identified and characterized. A bacteriophage that could infect was isolated from barnyard soil. We used electron microscopy and complete genome sequencing to identify the viral family, and evaluated its host range across 10 different species groups using both bacterial lawn and phage lawn assays. The latter assays were carried out using a scalable microplate assay to increase throughput and enable spectrophotometric quantitation. We also performed a phylogenetic analysis to determine the closest relatives of our phage. Phage vB_PagP-SK1 belongs to the genus of the Podoviridae family in the order Caudovirales. The 39,938 bp genome has a modular structure with early, middle, and late genes, along with the characteristic direct terminal repeats of 172 bp. Genome composition and synteny were similar to that of the phage, vB_EamP-L1, with the exception of a few loci that are most similar to genes of phage infecting other members of the A total of 94 strains were surveyed and vB_PagP-SK1 was found to infect 15 strains across three species, predominantly , along with one strain. vB_PagP-SK1 belongs to the genus and has a host range that spans groups, and is most closely related to the phage, vB_EamP-L1. The presence of xenologous genes in its genome indicates that the genome is a mosaic of multiple phages that infect members of the .
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关键词
Erwinia,Pantoea,Podoviridae,Teseptimavirus,host range,lytic
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