Tourmaline: A containerized workflow for rapid and iterable amplicon sequence analysis using QIIME 2 and Snakemake.

Luke R Thompson,Sean R Anderson,Paul A Den Uyl,Nastassia V Patin,Shen Jean Lim,Grant Sanderson,Kelly D Goodwin

GigaScience（2022）

引用 3|浏览16

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摘要

Automated workflows like Tourmaline enable rapid analysis of environmental amplicon data, decreasing the time from data generation to actionable results. Tourmaline is available for download at github.com/aomlomics/tourmaline.

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关键词

amplicon sequencing,eDNA,environmental DNA,meta-analysis,metabarcoding,microbiome

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