Molecular docking approach on the molecular interactions involving beta-lactoglobulin (βLG)-4-Dicyanomethylene2,6-Dimethyl-4-Hpyran (DDP) dye in the presence of an antibiotic, norfloxacin
Journal of the Indian Chemical Society(2022)
摘要
Molecular docking (MD) techniques were employed in the determination of binding stability of Beta-lactoglobulin (βLG) with 4-Dicyanomethylene2,6-Dimethyl-4-Hpyran (DDP) dye in the presence of quinolone-based antibiotic, norfloxacin (NOR). βLG acts as the host and drug/dye is employed as the guest molecule. The energetics and molecular interaction parameters of βLG-DDP were found to be stable than βLG-NOR. DDP resides in three distinguishably different binding sites of βLG, however the binding energies does not differ considerably. Interestingly, the energetics of βLG-NOR conformers differs significantly and reveals the existence of two distinguishable conformers. NOR acts as a hydrogen-bonding (HB) acceptor and the amino acid (AA) residues of βLG as the donor. The extent of HB interactions predominates over hydrophobic interactions in βLG-NOR than βLG-DDP complex. MD studies authenticates no direct binding of dye-drug inside the domains of βLG, when docked simultaneously. On the contrary, docking of dye to βLG-NOR complex enhances the binding stability. Several molecular interactions govern the stability of the complex and play a major role on the binding affinity of the host-guest complex in the presence of two competitive ligands. MD techniques authenticate that DDP/NOR is bound to several AA residues through conventional and non-conventional HB interactions accompanied with hydrophobic, pi-pi, pi-alkyl and van der Waals forces of interactions. Further, MD methods is employed as an efficient tool and a non-evasive technique in establishing the stability of 1:1complex of drug/dye with βLG in the present study.
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关键词
Beta-lactoglobulin,Dicyanomethylene dye,Norfloxacin,Molecular docking,Hydrogen-bonding,Hydrophobic interactions
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