The third international hackathon for applying insights into large-scale genomic composition to use cases in a wide range of organisms

Kimberly Walker,Divya Kalra, Rebecca Lowdon,Guangyi Chen,David Molik,Daniela C. Soto,Fawaz Dabbaghie,Ahmad Al Khleifat,Medhat Mahmoud,Luis F. Paulin,Muhammad Sohail Raza,Susanne P. Pfeifer,Daniel Paiva Agustinho,Elbay Aliyev,Pavel Avdeyev,Enrico R. Barrozo,Sairam Behera,Kimberley Billingsley,Li Chuin Chong,Deepak Choubey,Wouter De Coster,Yilei Fu,Alejandro Rafael Gener, Tim Hefferon,David M. Henke,Wolfram Höps,Anastasia Illarionova,Michael Jochum,Maria Jose,Rupesh K Kesharwani,Sree Rohit Raj Kolora,Jędrzej Kubica,Priya Lakra, Damaris Lattimer,Chia-Sin Liew,Bai-Wei Lo, Chunhsuan Lo,Anneri Lötter,Sina Majidian,Suresh Kumar Mendem,Rajarshi Mondal,Hiroko Ohmiya, Nasrin Parvin,Carolina Peralta,Chi-Lam Poon,Ramanandan Prabhakaran,Marie Saitou,Aditi Sammi,Philippe Sanio,Nicolae Sapoval,Najeeb Syed,Todd J Treangen,Gaojianyong Wang,Tiancheng Xu,Jianzhi Yang,Shangzhe Zhang,Weiyu Zhou,Frite J Sedlazeck,Ben Busby

F1000Research（2022）

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摘要

In October 2021, 59 scientists from 14 countries and 13 U.S. states collaborated virtually in the Third Annual Baylor College of Medicine & DNANexus Structural Variation hackathon. The goal of the hackathon was to advance research on structural variants (SVs) by prototyping and iterating on open-source software. This led to nine hackathon projects focused on diverse genomics research interests, including various SV discovery and genotyping methods, SV sequence reconstruction, and clinically relevant structural variation, including SARS-CoV-2 variants. Repositories for the projects that participated in the hackathon are available at https://github.com/collaborativebioinformatics.

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