An FPGA-Based Data Pre-Processing Architecture to Accelerate De-Novo Genome Assembly

Georgios Galanos,Pavlos Malakonakis,Apostolos Dollas

2021 IEEE 21st International Conference on Bioinformatics and Bioengineering (BIBE)（2021）

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摘要

Genome assembly is a field of bioinformatics which refers to the process of taking small fragments of genetic material and putting them back together in order to reconstruct the original DNA sequence from which the fragments originated. As the DNA genome assembly input datasets in most cases have a very large amount of data, it is important to develop custom architectures in order to speed up thes...

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关键词

FPGA accelerator,genome assembly,dataset filtering,Velvet,de Bruijn graphs

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