Methods and apparatus for probing signals after register retiming

A circuit design may have registers and combinational gates. Circuit design computing equipment may perform register retiming in the circuit design, whereby registers are moved across combinational gates. Information about the register moves may be recorded, and a modified circuit design is created. The circuit design computing equipment may implement the circuit design in an integrated circuit. A logic analyzer may be used to debug the circuit design implemented in the integrated circuit in real-time and at high-speed. To facilitate the debugging process, the circuit design computing equipment may augment the integrated circuit and/or compensate for register retiming based on the information recorded during register retiming.