Bos taurus strain:dairy beef (cattle): 1000 Bull Genomes Run 2, Bovine Whole Genome Sequence

A.C. Bouwman,H.D. Daetwyler,Amanda J. Chamberlain, Carla Hurtado Ponce,Mehdi Sargolzaei,Flavio S. Schenkel,Goutam Sahana, Armelle Govignon-Gion,Simon Boitard,Marlies Dolezal,Hubert Pausch,Rasmus F. Brøndum, Phil J. Bowman,Bo Thomsen,Bernt Guldbrandtsen,Mogens S. Lund,Bertrand Servin,Dorian J. Garrick,James M. Reecy,Johanna Vilkki,Alessandro Bagnato,Min Wang,Jesse L. Hoff,Robert D. Schnabel,Jeremy F. Taylor,Anna A.E. Vinkhuyzen,Frank Panitz,Christian Bendixen,Lars-Erik Holm, Birgit Gredler,Chris Hozé,Mekki Boussaha,Marie Pierre Sanchez,Dominique Rocha,Aurelien Capitan,Thierry Tribout,Anne Barbat,Pascal Croiseau,Cord Drögemüller,Vidhya Jagannathan,Christy Vander Jagt,John J. Crowley,Anna Bieber,Deirdre C. Purfield,Donagh P. Berry,Reiner Emmerling, Kay Uwe Götz,Mirjam Frischknecht, Ingolf Russ,Johann Sölkner, Curtis P. van Tassell,Ruedi Fries,Paul Stothard,R.F. Veerkamp,Didier Boichard,Mike E. Goddard,Ben J. Hayes

user-5da93e5d530c70bec9508e2b（2014）

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摘要

Whole genome sequence data (BAM format) of 234 bovine individuals aligned to UMD3.1. The aim of the study was to identify genetic variants (SNPs and indels) for downstream analysis such as imputation, GWAS, and detection of lethal recessives. Additional sequences for later 1000 bull genomes runs can be found at partners individual projects including PRJEB9343, PRJNA176557, PRJEB18113, PRNJA343262, PRJNA324822, PRJNA324270, PRJNA277147, PRJEB5462.

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关键词

Imputation (genetics),Genome,Whole genome sequencing,Genome-wide association study,Indel,Beef cattle,Single-nucleotide polymorphism,Genetics,Biology,Genetic variants

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