Accelerating Phylogenetics using FPGAs in the Cloud

Nikolaos Alachiotis,Andreas Brokalakis, Vasilis Amourgianos,Sotiris Ioannidis,Pavlos Malakonakis, Tasos Bokalidis

IEEE Micro（2021）

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摘要

Phylogenetics study the evolutionary history of organisms using an iterative process of creating and evaluating phylogenetic trees. This process is very computationally intensive; constructing a large phylogenetic tree requires hundreds to thousands of CPU hours. In this article, we describe an FPGA-based system that can be deployed on AWS EC2 F1 cloud instances to accelerate phylogenetic analyses...

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关键词

Phylogeny,Topology,Organisms,Mathematical model,DNA,Probability,Field programmable gate arrays

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