Complete Genome Sequences Of 12 Quinolone-Resistant Escherichia Coli Strains Containing Qnrs1 Based On Hybrid Assemblies

Håkon Kaspersen,Thomas H A Haverkamp,Hanna Karin Ilag,Øivind Øines,Camilla Sekse,Jannice Schau Slettemeås

MICROBIOLOGY RESOURCE ANNOUNCEMENTS（2021）

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摘要

In total, 12 quinolone-resistant Escherichia coli (QREC) strains containing qnrS1 were submitted to long-read sequencing using a FLO-MIN106 flow cell on a MinION device. The long reads were assembled with short reads (Illumina) and analyzed using the MOB-suite pipeline. Six of these QREC genome sequences were closed after hybrid assembly.

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