Phylogenomic Analysis of a 55.1-kb 19-Gene Dataset Resolves a Monophyletic Fusarium that Includes the Fusarium solani Species Complex

David M Geiser,Abdullah Al-Hatmi,Takayuki Aoki,Tsutomu Arie,Virgilio Balmas,Irene Barnes,Gary C Bergstrom,M K K Bhattacharyya,Cheryl L Blomquist,Robert Bowden,Balázs Brankovics,Daren W Brown,Lester William Burgess,Kathryn Bushley,Mark Busman,José F Cano-Lira,Joseph D Carrillo,Hao-Xun Chang,Chi-Yu Chen,Wanquan Chen,Martin I Chilvers,Sofia Noemi Chulze,Jeffrey J Coleman,Christina A Cuomo,Z Wilhelm de Beer,G Sybren de Hoog,Johanna Del Castillo-Múnera,Emerson Del Ponte,Javier Diéguez-Uribeondo,Antonio Di Pietro,Vérnonique Edel-Hermann,Wade H Elmer,Lynn Epstein,Akif Eskalen,Maria Carmela Esposto,Kathryne L Everts,Sylvia P Fernández-Pavía,Gilvan Ferreira da Silva,Nora A Foroud,Gerda Fourie,Rasmus J N Frandsen,Stanley Freeman,Michael Freitag,Omer Frenkel,Kevin K Fuller,Tatiana Gagkaeva,Donald Max Gardiner,Anthony E Glenn,Scott Gold,Tom Gordon,Nancy F Gregory,Marieka Gryzenhout,Josep Guarro,Beth Gugino,Santiago Gutiérrez,Kim Hammond-Kosack,Linda J Harris,Mónika Homa,Cheng-Fang Hong,László Hornok,Jenn-Wen Huang,Macit Ilkit,Adriaana Jacobs,Karin Jacobs,Cong Jiang,Maria Del Mar Jimenez-Gasco,Seogchan Kang,Matthew T Kasson,Kemal Kazan,John Carlyle Kennell,HyeSeon Kim,Harold Corby Kistler,Gretchen A Kuldau,Tomasz Kulik,Oliver Kurzai,Imane Laraba,Matthew H Laurence,Theresa Yun Lee,Yin-Won Lee,Yong-Hwan Lee,John F Leslie,Edward C Y Liew, Lily W Lofton,Antonio Logrieco,Manuel Sánchez López-Berges,Alicia Graciela Luque,Erik Lysøe,Li-Jun Ma,Robert E Marra,Frank N Martin, Sara Ruth May,Susan McCormick,Chyanna T McGee,Jacques F Meis,Quirico Migheli,Nik Mohd Izham Mohamed Nor,Michel Monod,Antonio Moretti,Diane Mostert,Giuseppina Mulé,Françoise Munaut,Gary P Munkvold,Paul Nicholson,Marcio Nucci,Kerry O'Donnell,Matias Pasquali,Ludwig H Pfenning,Anna Prigitano,Robert Proctor,Stéphane Ranque,Stephen Rehner,Martijn Rep,Gerardo Rodríguez-Alvarado,Lindy J Rose,Mitchell George Roth,Carmen Ruiz-Roldán,Amgad A Saleh,Baharuddin Salleh,Hyunkyu Sang,Mercedes Scandiani,Jonathan Scauflaire,David Schmale,Dylan Pg Short,Adnan Šišić,Jason Smith,Christopher W Smyth,Hokyoung Son,Ellie Spahr,Jason E Stajich,Emma Steenkamp,Christian Steinberg, Rajagopal Subramaniam,Haruhisa Suga,Brett Anthony Summerell, Antonella Susca,Cassandra Lynn Swett,Christopher Toomajian,Terry Jarianna Torres-Cruz,Anna Maria Tortorano,Martin Urban,Lisa J Vaillancourt,Gary E Vallad,Theo van der Lee,Dan Vanderpool,Anne D van Diepeningen,Martha Vaughan,Eduard Venter,Marcele Vermeulen,Paul E Verweij,Altus Viljoen,Cees Waalwijk,Emma C Wallace,Grit Walther,Jie Wang,Todd Ward,Brian Wickes,Nathan P Wiederhold,Michael J Wingfield,Ana K M Wood,Jin-Rong Xu,X B Yang,Tapani Yli-Matilla,Sung-Hwan Yun,Latiffah Zakaria,Hao Zhang,Ning Zhang,Sean Zhang,Xue Zhang

PHYTOPATHOLOGY(2021)

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摘要
Scientific communication is facilitated by a data-driven, scientifically sound taxonomy that considers the end-user's needs and established successful practice. In 2013, the Fusarium community voiced near unanimous support for a concept of Fusarium that represented a Glade comprising all agriculturally and clinically important Fusarium species, including the F. solani species complex (FSSC). Subsequently, this concept was challenged in 2015 by one research group who proposed dividing the genus Fusarium into seven genera, including the FSSC described as members of the genus Neocosmospora, with subsequent justification in 2018 based on claims that the 2013 concept of Fusarium is polyphyletic. Here, we test this claim and provide a phylogeny based on exonic nucleotide sequences of 19 orthologous protein-coding genes that strongly support the monophyly of Fusarium including the FSSC. We reassert the practical and scientific argument in support of a genus Fusarium that includes the FSSC and several other basal lineages, consistent with the longstanding use of this name among plant pathologists, medical mycologists, quarantine officials, regulatory agencies, students, and researchers with a stake in its taxonomy. In recognition of this monophyly, 40 species described as genus Neocosmospora were recombined in genus Fusarium, and nine others were renamed Fusarium. Here the global Fusarium community voices strong support for the inclusion of the FSSC in Fusarium, as it remains the best scientific, nomenclatural, and practical taxonomic option available.
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evolution, fungal pathogens
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