Network Modeling of Complex Data Sets.

Piet Jones,Deborah Weighill,Manesh Shah,Sharlee Climer,Jeremy Schmutz,Avinash Sreedasyam,Gerald Tuskan,Daniel Jacobson

Methods in molecular biology (Clifton, N.J.)（2020）

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摘要

We demonstrate a selection of network and machine learning techniques useful in the analysis of complex datasets, including 2-way similarity networks, Markov clustering, enrichment statistical networks, FCROS differential analysis, and random forests. We demonstrate each of these techniques on the Populus trichocarpa gene expression atlas.

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关键词

Differential analysis,Enrichment,FCROS,Fisher exact test,Machine learning,Random forests,Similarity network

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