rdmc: An Open Source R Package Implementing Convergent Adaptation Models of Lee and Coop (2017).

G3-GENES GENOMES GENETICS(2020)

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摘要
The availability of whole genome sequencing data from multiple related populations creates opportunities to test sophisticated population genetic models of convergent adaptation. Recent work byLee and Coop (2017)developed models to infer modes of convergent adaption at local genomic scales, providing a rich framework for assessing how selection has acted across multiple populations at the tested locus. Here I present,rdmc, an R package that builds on the existing software implementation ofLee and Coop (2017)that prioritizes ease of use, portability, and scalability. I demonstrate installation and comprehensive overview of the package's current utilities.
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关键词
R,Software,Convergent Adaptation,Population Genetics,Composite Likelihood
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