Spectral Jaccard Similarity - A New Approach to Estimating Pairwise Sequence Alignments.

Tavor Z. Baharav,Govinda M. Kamath,David N. C. Tse,Ilan Shomorony

RECOMB（2020）

引用 10|浏览86

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摘要

We demonstrate improvements in AUC of the Spectral Jaccard Similarity based filters over Jaccard Similarity based filters on 40 datasets of PacBio reads from the NCTC collection. The code is available at .

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关键词

DNA sequencing,Jaccard similarity,genome assembly,locality-sensitive hashing,min-hash,sequence alignment,singular value decomposition,spectral methods

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