Yersinia Canariae Sp. Nov., Isolated From A Human Yersiniosis Case

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY(2020)

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摘要
A Gram-negative rod from the Yersinia genus was isolated from a clinical case of yersiniosis in the United Kingdom. Long read sequencing data from an Oxford Nanopore Technologies (ONT) MinION in conjunction with Illumina HiSeq reads were used to generate a finished quality genome of this strain. Overall Genome Related Index (OGRI) of the strain was used to determine that it was a novel species within Yersinia, despite biochemical similarities to Yersinia enterocolitica. The 165 ribosomal RNA gene accessions are MN434982-MN434987 and the accession number for the complete and closed chromosome is CP043727. The type strain is SRR7544370(T) (=NCTC 14382(T)/=LMG 31573(T)).
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关键词
Yersinia canariae, MinION, whole genome sequencing, taxonomy, yersiniosis, Oxford Nanopore Technologies
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