Metagenome level metabolic network reconstruction analysis reveals the microbiome in the Bogotá River is functionally close to the microbiome in produced water

•Metagenome metabolic networks provide information of complex ecological processes.•Metabolic potential of a microbiome is not the same as active metabolic functions.•Contamination has distanced Bogotá River’s metabolic state from unpolluted systems.•Active reaction modules place Bogotá River closer to produced water.