Rapid whole-genome based typing and surveillance of avipoxviruses using nanopore sequencing.

Guillaume Croville,Guillaume Le Loc'h,Catherine Zanchetta,Maxime Manno,Christelle Camus-Bouclainville,Christophe Klopp,Maxence Delverdier,Marie-Noëlle Lucas,Cécile Donnadieu,Mattias Delpont,Jean-Luc Guérin

Journal of Virological Methods（2018）

引用 28|浏览34

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摘要

•Whole-genome sequencing of avipoxviruses directly from lesions.•The longest mapped read was obtained from the cutaneous sample and sized 61 kb.•New applications accessible for rapid poxvirus genomic surveillance.

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关键词

Fowlpox,Poxvirus,Next-generation sequencing,Oxford nanopore MinION,Whole-genome surveillance

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