SpatialDE: identification of spatially variable genes

Valentine Svensson,Sarah A Teichmann,Oliver Stegle

NATURE METHODS（2018）

引用 280|浏览11

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摘要

SpatialDE identifies genes with significant spatial expression patterns from multiplexed imaging or spatial RNA-sequencing data, and can cluster genes with similar spatial patterns as a form of expression-based tissue histology.

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关键词

RNA sequencing,Software,Statistical methods,Transcriptomics,Life Sciences,general,Biological Techniques,Biological Microscopy,Biomedical Engineering/Biotechnology,Bioinformatics,Proteomics

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