Just-in-time expression of influential genes in the cellular networks of the malaria parasite Plasmodium falciparum during the red blood cycle

2016 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)(2016)

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摘要
Malaria remains one of the most important public health concerns worldwide. It causes nearly half a million deaths every year, and about 40% of the world's population lives in the endemic regions of malaria. A major hurdle in antimalarial development is our limited understanding of the dynamic cellular networks in the malaria parasite. In this study, by coupling RNA-Seq analysis and network mining using a PageRank-based algorithm, we investigated the temporal-specific expression of parasite genes during the 48-hour red blood cycle, and identified genes that may play influential roles in parasite development and invasion. The just-in-time mechanism for gene expression may contribute to a dynamic yet effective adaptive strategy of the malaria parasite.
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关键词
malaria,development cycle,RNA-Seq,PageRank,systems biology,Plasmodium falciparum
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