Redi: A Simulator of Stochastic Biochemical Reaction-Diffusion Systems

Paola Lecca,Lorenzo Dematte,Adaoha E. C. Ihekwaba,Corrado Priami

Advances in System Simulation（2010）

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摘要

We present a new model of anisotropic reaction-diffusion systems and the algorithmic framework of the software Redi (Reaction-Diffusion simulator) that implements this model. As illustrative application, we show the ability of Redi to reproduce the observed dynamics of the bicoid protein gradient in the Drosophila Melanogaster embryo.

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关键词

drosophila melanogaster embryo,illustrative application,stochastic biochemical reaction-diffusion systems,observed dynamic,software redi,new model,anisotropic reaction-diffusion system,bicoid protein gradient,algorithmic framework,reaction-diffusion simulator,computational modeling,force,stochastic processes,stochastic simulation,embryos,proteins,reaction diffusion,chemicals,biochemistry

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