Kim Sun

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Papers41 papers

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Logic-based Analysis of Gene Expression Data Predicts Association Between TNF, TGFB1 and EGF Pathways in Basal-like Breast Cancer

Kyuri Jo,Beatriz Santos-Buitrago, Minsu Kim,Sungmin Rhee,Carolyn Talcott,Sun Kim

Methods (San Diego, Calif.), (2020)

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Erratum to: Machine learning-based analysis of multi-omics data on the cloud for investigating gene regulations

Minsik Oh, Sungjoon Park,Sun Kim,Heejoon Chae

Briefings in bioinformatics, (2020)

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Machine learning-based analysis of multi-omics data on the cloud for investigating gene regulations

Minsik Oh, Sungjoon Park,Sun Kim, Heejoon Chae

Briefings in bioinformatics, (2020)

WOSBibtex

Towards multi-omics characterization of tumor heterogeneity: a comprehensive review of statistical and machine learning approaches

Dohoon Lee,Youngjune Park,Sun Kim

Briefings in bioinformatics, (2020)

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A secure SNP panel scheme using homomorphically encrypted K-mers without SNP calling on the user side

Sungjoon Park, Minsu Kim, Seokjun Seo, Seungwan Hong,Kyoohyung Han, Keewoo Lee,Jung Hee Cheon,Sun Kim

BMC Genomics, no. suppl (2019): 163-174

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Bioinformatic analysis of peripheral blood RNA-sequencing sensitively detects the cause of late graft loss following overt hyperglycemia in pig-to-nonhuman primate islet xenotransplantation

Hyun-Je Kim,Ji Hwan Moon,Hyunwoo Chung,Jun-Seop Shin,Bongi Kim,Jong-Min Kim,Jung-Sik Kim,Il-Hee Yoon,Byoung-Hoon Min, Seong-Jun Kang,Yong-Hee Kim,Kyuri Jo

Scientific reports, no. 1 (2019): 18835-11

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CaPSSA: Visual evaluation of cancer biomarker genes for patient stratification and survival analysis using mutation and expression data

Yeongjun Jang,Jihae Seo,Sun Kim,Sanghyuk Lee

Bioinformatics (Oxford, England), no. 24 (2019): 5341-5343

Cited by4WOSEIBibtex

Logic-based Analysis of Gene Expression Data Predicts Pathway Crosstalk between TNF, TGFB1 and EGF in Basal-like Breast Cancer

Kyuri Jo, Beatriz Santos Buitrago, Minsu Kim, Sungmin Rhee,Carolyn Talcott,Sun Kim

bioRxiv, pp.614933-14, (2019)

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BioBERT: a pre-trained biomedical language representation model for biomedical text mining

Jinhyuk Lee, Wonjin Yoon, Sungdong Kim,Donghyeon Kim,Sunkyu Kim, Chan Ho So,Jaewoo Kang

Bioinformatics (Oxford, England), no. 4 (2019): 1234-1240

Cited by237EIWOSBibtex

ReSimNet: Drug Response Similarity Prediction using Siamese Neural Networks

Minji Jeon, Donghyeon Park,Jinhyuk Lee,Hwisang Jeon, Miyoung Ko,Sunkyu Kim, Yonghwa Choi,Aik-Choon Tan,Jaewoo Kang

Bioinformatics (Oxford, England), no. 24 (2019): 5249-5256

Cited by2WOSEIBibtex

mirTime: Identifying Condition-Specific Targets of MicroRNA in Time-series Transcript Data using Gaussian Process Model and Spherical Vector Clustering

Hyejin Kang, Hongryul Ahn,Kyuri Jo, Minsik Oh,Sun Kim

Bioinformatics (Oxford, England), (2019)

Cited by3WOSBibtex

SpliceHetero: An information theoretic approach for measuring spliceomic intratumor heterogeneity from bulk tumor RNA-seq

Minsu Kim, Sangseon Lee, Sangsoo Lim,Sun Kim

PloS one, no. 10 (2019)

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In silico experiment system for testing hypothesis on gene functions using three condition specific biological networks

Chai-Jin Lee,Dongwon Kang, Sangseon Lee,Sunwon Lee,Jaewoo Kang,Sun Kim

Methods (San Diego, Calif.), (2018)

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Comprehensive and critical evaluation of individualized pathway activity measurement tools on pan-cancer data

Sangsoo Lim, Sangseon Lee,Inuk Jung, Sungmin Rhee,Sun Kim

Briefings Bioinform., no. 1 (2018): 36-46

Cited by6WOSEIBibtex

Deep learning of mutation-gene-drug relations from the literature

Kyubum Lee, Byounggun Kim,Yonghwa Choi,Sunkyu Kim, Won-Ho Shin,Sunwon Lee,Sungjoon Park,Seongsoon Kim,Aik Choon Tan,Jaewoo Kang

BMC Bioinformatics, no. 1 (2018): 21:1-21:13

Cited by22EIWOSBibtex

Literature-based condition-specific miRNA-mRNA target prediction

Minsik Oh,Sungmin Rhee,Ji Hwan Moon,Heejoon Chae,Sunwon Lee,Jaewoo Kang,Sun Kim

PloS one, no. 3 (2017)

Cited by17WOSBibtex

MIDAS: Mining differentially activated subpaths of KEGG pathways from multi-class RNA-seq data

Sangseon Lee,Youngjune Park,Sun Kim

Methods (San Diego, Calif.), (2017): 13-24

Cited by1WOSBibtex

Transcriptional Network Analysis Reveals Drought Resistance Mechanisms of AP2/ERF Transgenic Rice

Hongryul Ahn,Inuk Jung,Seon-Ju Shin, Jinwoo Park, Sungmin Rhee,Ju-Kon Kim,Woosuk Jung,Hawk-Bin Kwon,Sun Kim

Frontiers in plant science, (2017): 1044-1044

Cited by5WOSBibtex

Information theoretic sub-network mining characterizes breast cancer subtypes in terms of cancer core mechanisms

Jinwoo Park, Benjamin Hur,Sungmin Rhee, Sangsoo Lim,Min-Su Kim,Kwangsoo Kim,Wonshik Han,Sun Kim

J. Bioinformatics and Computational Biology, no. 5 (2016): 1644002-1644002

Cited by1WOSEIBibtex

CLIP-GENE: a web service of the condition specific context-laid integrative analysis for gene prioritization in mouse TF knockout experiments

Benjamin Hur, Sangsoo Lim,Heejoon Chae, Seokjun Seo,Sunwon Lee,Jaewoo Kang,Sun Kim

Biology direct, no. 1 (2016): 57

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