Shawn Gomez

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Dr. Gomez’s research focuses on bioinformatics and computational systems biology, with particular emphasis on understanding the architecture and dynamics of cell signaling in human disease. Research Interests Computational biology Bioinformatics Systems biology Image analysis Mathematical modeling

Research Interests

Papers共 94 篇Author StatisticsCo-AuthorSimilar Experts

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Tumor-Intrinsic Kinome Landscape of Pancreatic Cancer Reveals New Therapeutic Approaches

Yi Xu,Xianlu L. Peng,Michael P. East,Ian C. Mccabe, Grace C. Stroman,Madison R. Jenner,Priscilla S. Chan,Ashley B. Morrison, Emily C. Shen, Silvia G. Hererra,Chinmaya U. Joisa,Naim U. Rashid,Alina C. Iuga,Shawn M. Gomez,Lisa Miller-Phillips,Stefan Boeck,Volker Heinemann,Michael Haas,Steffen Ormanns,Gary L. Johnson, Jen

CANCER DISCOVERY（2025）

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Linking Gene Expression to Clinical Outcomes in Pediatric Crohn’s Disease Using Machine Learning

Kevin A. Chen,Nina C. Nishiyama,Meaghan M. Kennedy Ng,Alexandria Shumway,Chinmaya U. Joisa,Matthew R. Schaner,Grace Lian,Caroline Beasley,Lee-Ching Zhu,Surekha Bantumilli,Muneera R. Kapadia,Shawn M. Gomez,Terrence S. Furey,Shehzad Z. Sheikh

SCIENTIFIC REPORTSno. 1 (2024)

Cited1Views0WOSNATUREBibtex

Kinome State is Predictive of Cell Viability in Pancreatic Cancer Tumor and Cancer-Associated Fibroblast Cell Lines

Matthew E. Berginski,Madison R. Jenner,Chinmaya U. Joisa,Gabriela Herrera Loeza,Brian T. Golitz,Matthew B. Lipner,Jack R. Leary,Naim Rashid,Gary L. Johnson, Jen,Shawn M. Gomez

PEERJ (2024)

Cited2Views0WOSBibtex

Quantitative Proteomic Mass Spectrometry of Protein Kinases to Determine Dynamic Heterogeneity of the Human Kinome

Michael P East,Robert W Sprung,Denis O Okumu, J Felix Olivares-Quintero,Chinmaya U Joisa,Xin Chen,Qiang Zhang,Petra Erdmann-Gilmore,Yiling Mi,Noah Sciaky,James P Malone,Sonam Bhatia,Ian C McCabe, Yi Xu, Matthew D Sutcliffe,Jingqin Luo,Patricia A Spears,Charles M Perou,H Shelton Earp,Lisa A Carey, Jen,David L Spector,Shawn M Gomez,Philip M Spanheimer,R Reid Townsend,Gary L Johnson

bioRxiv the preprint server for biology (2024)

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Post-operative Crohn’s Disease Recurrence and Infectious Complications: A Transcriptomic Analysis

Kevin A. Chen, Valerie Gartner, Kimberly C. Darlington, Sophie R. Silverstein,Meaghan M. Kennedy Ng,Logan Butler, Kelli Avalos,Nina C. Nishiyama,Chinmaya U. Joisa,Matthew R. Schaner,Grace Lian,Caroline Beasley, Gwen W. Lau, Mikaela J. Bauer,Lee-Ching Zhu,Muneera R. Kapadia,Shawn M. Gomez,Terrence S. Furey,Shehzad Z. Sheikh

Digestive Diseases and Sciencespp.1-12, (2024)

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Utilizing Low-Dimensional Molecular Embeddings for Rapid Chemical Similarity Search

Kathryn E. Kirchoff,James Wellnitz,Joshua E. Hochuli,Travis Maxfield,Konstantin I. Popov,Shawn Gomez,Alexander Tropsha

ADVANCES IN INFORMATION RETRIEVAL, ECIR 2024, PT II（2024）

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SALSA: Semantically-Aware Latent Space Autoencoder

Kathryn E. Kirchoff,Travis Maxfield,Alexander Tropsha,Shawn M. Gomez

THIRTY-EIGHTH AAAI CONFERENCE ON ARTIFICIAL INTELLIGENCE, VOL 38 NO 12（2024）

Cited3Views0EIBibtex

Prediction of Pathologic Complete Response for Rectal Cancer Based on Pre-treatment Factors Using Machine Learning

Kevin A. Chen,Paolo Goffredo,Logan R. Butler,Chinmaya U. Joisa,Jose G. Guillem,Shawn M. Gomez,Muneera R. Kapadia

DISEASES OF THE COLON & RECTUM（2024）

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Illuminating Function of the Understudied Druggable Kinome

Shawn M. Gomez,Alison D. Axtman,Timothy M. Willson,Michael B. Major,Reid R. Townsend,Peter K. Sorger,Gary L. Johnson

Drug Discovery Today（2024）

Cited2Views0WOSBibtex

Combined Kinome Inhibition States Are Predictive of Cancer Cell Line Sensitivity to Kinase Inhibitor Combination Therapies

Chinmaya U. Joisa,Kevin A. Chen, Samantha Beville,Timothy Stuhlmiller,Matthew E. Berginski,Denis Okumu,Brian T. Golitz,Michael P. East,Gary L. Johnson,Shawn M. Gomez

BIOCOMPUTING 2024, PSB 2024（2024）

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Papers共 94 篇Author StatisticsCo-AuthorSimilar Experts