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Richard Bonneau is an American computational biologist whose primary research is in the following areas: learning networks from functional genomics data and predicting and designing protein and peptiodomimetic structure. An professor at New York University, he holds appointments in the Department of Biology and the Courant Institute of Mathematical Sciences. In 2008, Bonneau was selected as one of the top 20 scientists under 40 by Discover magazine.[1]
In the area of structure prediction, Bonneau was one of the early authors on the Rosetta code, which was one of the first codes to demonstrate the ability to predict protein structure in the absence of sequence homology.[2][3] Using IBM's world community grid to carry out folding of whole proteomes, his group has also applied structure prediction to the problem of genome and proteome annotation.[4][5][6] Bonneau’s laboratory strives to develop new methods that let systems-biologists derive functional forms from relevant biology and parameters from data automatically.
It has made key contributions to the areas of genomics data analysis, focusing on two primary areas: 1. methods for network inference that uncover dynamics and topology from data and 2. methods that learn condition dependent co-regulated groups from integrations of different genomics data-types.[7]
In 2013, he and his colleagues at NYU started a project to examine the impact of social media use on political attitudes and participation by applying methods from a range of academic disciplines. While social media's influence on political participation and attitudes remains in question, Twitter, Facebook, and Instagram undoubtedly offer amounts of data that far exceed earlier research methods. The project-- Social Media and Political Participation (SMaPP) --relies on bothsurvey data and publicly available social media data such as "Tweets"to address a range of questions concerning the causal processes that shape political participation.
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bioRxiv : the preprint server for biology (2024)
Jacob Kronenberg, Stanley Chu,Andrew Olsen,Dustin Britton, Leif Halvorsen,Shengbo Guo, Ashwitha Lakshmi, Jason Chen, Maria Jinu Kulapurathazhe, Cetara A. Baker, Benjamin C. Wadsworth, Cynthia J. Van Acker,
CHEMISTRYOPENpp.e202300263-e202300263, (2024)
mSystemsno. 2 (2023): e0117822-e0117822
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