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Patrick M. Gaffney

College of Marine Studies, University of Delaware, Lewes, DE, USA

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Correction: Identification and replication of RNA-Seq gene network modules associated with depression severity

Trang T. Le,Jonathan Savitz, Hideo Suzuki,Masaya Misaki,T. Kent Teague,Bill C. White,Julie H. Marino,Graham Wiley,Patrick M. Gaffney,Wayne C. Drevets,Brett A. McKinney,Jerzy Bodurka

Translational Psychiatry, no. 1 (2020): 282

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FUNCTIONAL EVALUATION OF THE SJOGREN'S SYNDROME AND SYSTEMIC LUPUS ERYTHEMATOSUS DDX6-CXCR5 RISK INTERVAL

M. M. Wiley, B. Khatri,K. L. Tessneer,M. L. Joachims, A. M. Stolarczyk,A. Rasmussen,S. J. Bowman,L. Radfar,R. Omdal,M. Wahren-Herlenius, B. M. Warner,T. Witte

ANNALS OF THE RHEUMATIC DISEASES, no. SUPnan (2020): 89.0-90

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Mutations in Spliceosomal Genes PPIL1 and PRP17 Cause Neurodegenerative Pontocerebellar Hypoplasia with Microcephaly

Guoliang Chai, Alice Webb,Chen Li, Danny Antaki, Sangmoon Lee,Martin W Breuss, Nhi Lang, Valentina Stanley, Paula Anzenberg, Xiaoxu Yang, Trevor Marshall,Patrick Gaffney

Neuron, (2020)

WOSBibtex

An active chromatin interactome in relevant cell lines elucidates biological mechanisms at genetic risk loci for dermatological traits

Chenfu Shi, Helen Ray-Jones, James Ding, Kate Duffus, Yao Fu, Vasanthi Priyadarshini Gaddi, Oliver Gough, Jenny Hankinson,Paul Martin,Amanda McGovern,Annie Yarwood,Patrick Gaffney

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Nearest-Neighbor Projected Distance Regression for Epistasis Detection in GWAS With Population Structure Correction

Marziyeh Arabnejad,Courtney G Montgomery,Patrick M Gaffney,Brett A McKinney

Frontiers in genetics, (2020): 784

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Mapping DNA interaction landscapes in psoriasis susceptibility loci highlights KLF4 as a target gene in 9q31

Helen Ray-Jones, Kate Duffus, Amanda McGovern,Paul Martin, Chenfu Shi, Jenny Hankinson, Oliver Gough,Annie Yarwood,Andrew P Morris,Antony Adamson,Christopher Taylor, James Ding

BMC Biology, no. 1 (2020): 1-20

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Latent autoimmunity across disease-specific boundaries in at-risk first-degree relatives of SLE and RA patients

Judith A James, Hua Chen,Kendra A Young, Elizabeth A Bemis,Jennifer Seifert, Rebecka L Bourn,Kevin D Deane,M Kristen Demoruelle,Marie Feser,James R O'Dell,Michael H Weisman,Richard M Keating

EBioMedicine, (2019): 76-85

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Chromatin-based techniques map DNA interaction landscapes in psoriasis susceptibility loci and highlight KLF4 as a target gene in 9q31

Helen Ray-Jones, Kate Duffus,Amanda McGovern,Paul Martin, Chenfu Shi, Jenny Hankinson, Oliver Gough,Annie Yarwood,Andrew P Morris,Antony Adamson,Christopher Taylor, James Ding

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Risk Variants with Opposing Functional Effects Result in Hypomorphic Expression of TNIP1 and Other Genes within a 3D Chromatin Network

Satish Pasula,Kandice L Tessneer, Yao Fu, Jaanam Gopalakrishnan,Richard C Pelikan,Jennifer A Kelly, Graham B Wiley, Mandi M Wiley,Patrick M Gaffney

Arthritis & rheumatology (Hoboken, N.J.), (2019)

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Association of Epstein-Barr virus serological reactivation with transitioning to systemic lupus erythematosus in at-risk individuals

Neelakshi R Jog,Kendra A Young,Melissa E Munroe, Michael T Harmon,Joel M Guthridge,Jennifer A Kelly,Diane L Kamen,Gary S Gilkeson,Michael H Weisman,David R Karp,Patrick M Gaffney,John B Harley

ANNALS OF THE RHEUMATIC DISEASES, no. 9.0 (2019): 1235-1241

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Genetic variants at the 16p13 locus confer risk for eosinophilic esophagitis

Leah C Kottyan, Avery Maddox, Julian R Braxton,Emily M Stucke,Vince Mukkada,Philip E Putnam,J Pablo Abonia,Mirna Chehade,Robert A Wood,Robbie D Pesek,Brian P Vickery,Glenn T Furuta

Genes and immunity, (2018)

Cited by3WOSBibtex

Identification and replication of RNA-Seq gene network modules associated with depression severity

Trang T Le,Jonathan Savitz, Hideo Suzuki,Masaya Misaki,T Kent Teague,Bill C White,Julie H Marino,Graham Wiley,Patrick M Gaffney,Wayne C Drevets,Brett A McKinney,Jerzy Bodurka

Translational psychiatry, no. 1 (2018): 180

Cited by2WOSBibtex

Genetic fine mapping of Systemic Lupus Erythematosus MHC associations in Europeans and African Americans

Ken B Hanscombe,David L Morris,Janelle A Noble, Alexander T Dilthey, Philip Tombleson,Kenneth M Kaufman,Mary Comeau,Carl D Langefeld,Marta E Alarcon-Riquelme,Patrick M Gaffney,Chaim O Jacob, Kathy L Sivils

Human molecular genetics, (2018)

Cited by1WOSBibtex

GG-07 Regulatory polymorphisms in EMSY gene are associated with autoantibodies in healthy individuals

Prithvi Raj,Ran Song,Benjamin E Wakeland,Igor Dozmorov,Kasthuribai Viswanathan,Chaoying Liang, Carlos Arana,Bo Zhang,JinChun Zhou,Bernard R Lauwerys,Nancy J Olsen,Swapan Nath

Lupus science & medicine, (2018)

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βIV Spectrinopathies Cause Profound Intellectual Disability, Congenital Hypotonia, and Motor Axonal Neuropathy

Chih-Chuan Wang,Xilma R Ortiz-González,Sabrina W Yum, Sara M Gill, Amy White, Erin Kelter, Laurie H Seaver,Sansan Lee,Graham Wiley,Patrick M Gaffney,Klaas J Wierenga,Matthew N Rasband

AMERICAN JOURNAL OF HUMAN GENETICS, no. 6 (2018): 1158-1168

Cited by2WOSBibtex

Enhancer histone-QTLs are enriched on autoimmune risk haplotypes and influence gene expression within chromatin networks

Richard C Pelikan,Jennifer A Kelly,Yao Fu,Caleb A Lareau,Kandice L Tessneer,Graham B Wiley,Mandi M Wiley,Stuart B Glenn,John B Harley,Joel M Guthridge,Judith A James,Martin J Aryee

Nature communications, no. 1 (2018): 2905

Cited by2WOSBibtex

From association to mechanism in complex disease genetics: the role of the 3D genome

Yao Fu,Kandice L. Tessneer, Chuang Li,Patrick M. Gaffney

Arthritis Research & Therapy, no. 1 (2018): 216

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Site-1 protease deficiency causes human skeletal dysplasia due to defective inter-organelle protein trafficking

Yuji Kondo,Jianxin Fu, Hua Wang,Christopher Hoover,J Michael McDaniel, Richard Steet, Debabrata Patra,Jianhua Song,Laura Pollard, Sara Cathey,Tadayuki Yago,Graham Wiley

JCI insight, no. 14 (2018)

Cited by1WOSBibtex

Brief Report: Association of Natural Killer Cell Ligand Polymorphism HLA-C Asn80Lys With the Development of Anti-SSA/Ro-Associated Congenital Heart Block

Hannah C. Ainsworth,Miranda C. Marion,Tiziana Bertero,Antonio Brucato,Rolando Cimaz,Nathalie Costedoat-Chalumeau,Micaela Fredi,Patrick Gaffney,Jennifer Kelly,Kateri Levesque,Alice Maltret,Nathalie Morel

Arthritis & Rheumatism, no. 11 (2017): 2170-2174

Cited by1Bibtex

Interferon Regulatory Factor 5 (IRF5) Interacts with the Translation Initiation Complex and Promotes mRNA Translation During the Integrated Stress Response to Amino Acid Deprivation

James D. Warner,Mandi M. Wiley, Ying-Yu Wu,Feng Wen,Michael Kinter,Akiko Yanagiya,Kandice L. Tessneer,Patrick M. Gaffney

bioRxiv, pp.163998-20, (2017)

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