基本信息
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个人简介
🎓 Ph.D., molecular biologist & bioinformatician
I'm trying to understand the evolution and role of RNA and RNPs in biological systems using computational methods (machine learning, molecular dynamics, structure prediction) and experimental (yeast genetics) and codify this knowledge into predictive computational models that can be applied for future RNA therapeutics.
Key papers:
Cwc15 & splicing catalysis with Konarska @ iMOL, Poland [inprogress]
mqapRNA: model quality assessment program for RNA 3D models with Bujnicki @IIMCB, Poland [inprogress]
RNA-Puzzles toolkit: A computational resource of RNA 3D structure benchmark datasets, structure manipulation, and evaluation tools with the RNA-Puzzle Team @ IIMCB & Warsaw University, Poland
RNA 3D Structure Prediction Using Multiple Sequence Alignment Information with Das and Bujnicki @ Stanford University, USA & IIMCB, Poland
Rearrangements within the U6 snRNA core at the transition between the two catalytic steps of splicing with Konarska @ Warsaw University, Poland
IIMCB = International Institute of Molecular and Cell Biology
研究兴趣
论文共 29 篇作者统计合作学者相似作者
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引用量
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期刊级别
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biorxiv(2025)
JOURNAL OF MOLECULAR BIOLOGYno. 17 (2024)
Fan Bu, Yagoub Adam,Ryszard W. Adamiak,Maciej Antczak, Belisa Rebeca H. de Aquino,Nagendar Goud Badepally,Robert T. Batey,Eugene F. Baulin, Pawel Boinski,Michal J. Boniecki,Janusz M. Bujnicki,Kristy A. Carpenter,Jose Chacon,Shi-Jie Chen,Wah Chiu,Pablo Cordero,Naba Krishna Das,Rhiju Das,Wayne K. Dawson,Frank Dimaio,Feng Ding,Anne-Catherine Dock-Bregeon,Nikolay V. Dokholyan,Ron O. Dror,Stanislaw Dunin-Horkawicz,Stephan Eismann,Eric Ennifar,Reza Esmaeeli, Masoud Amiri Farsani,Adrian R. Ferre-D'Amare,Caleb Geniesse,George E. Ghanim,Horacio V. Guzman,Iris V. Hood,Lin Huang, Dharm Skandh Jain,Farhang Jaryani,Lei Jin,Astha Joshi, Masha Karelina,Jeffrey S. Kieft,Wipapat Kladwang,Sebastian Kmiecik,Deepak Koirala,Markus Kollmann,Rachael C. Kretsch,Mateusz Kurcinski, Jun Li, Shuang Li,Marcin Magnus,Benoit Masquida,S. Naeim Moafinejad,Arup Mondal,Sunandan Mukherjee,Thi Hoang Duong Nguyen, Grigory Nikolaev,Chandran Nithin, Grace Nye, Iswarya P. N. Pandaranadar Jeyeram,Alberto Perez,Phillip Pham,Joseph A. Piccirilli, Smita Priyadarshini Pilla,Radoslaw Pluta,Simon Poblete,Almudena Ponce-Salvatierra,Mariusz Popenda,Lukasz Popenda,Fabrizio Pucci,Ramya Rangan,Angana Ray,Aiming Ren,Joanna Sarzynska,Congzhou Mike Sha,Filip Stefaniak,Zhaoming Su,Krishna C. Suddala,Marta Szachniuk,Raphael Townshend,Robert J. Trachman III, Jian Wang,Wenkai Wang,Andrew Watkins,Tomasz K. Wirecki,Yi Xiao,Peng Xiong,Yiduo Xiong,Jianyi Yang,Joseph David Yesselman,Jinwei Zhang,Yi Zhang,Zhenzhen Zhang,Yuanzhe Zhou,Tomasz Zok,Dong Zhang,Sicheng Zhang,Adriana Zyla,Eric Westhof,Zhichao Miao
NATURE METHODS (2024)
S. Naeim Moafinejad, Belisa R. H. de Aquino,Michal J. Boniecki, Iswarya P. N. Pandaranadar Jeyeram, Grigory Nikolaev,Marcin Magnus, Masoud Amiri Farsani,Nagendar Goud Badepally,Tomasz K. Wirecki,Filip Stefaniak,Janusz M. Bujnicki
NUCLEIC ACIDS RESEARCHno. W1 (2024): W556-W556
S. Naeim Moafinejad, Belisa R. H. de Aquino,Michal J. Boniecki, Iswarya P. N. Pandaranadar Jeyeram, Grigory Nikolaev,Marcin Magnus, Masoud Amiri Farsani,Nagendar Goud Badepally,Tomasz K. Wirecki,Filip Stefaniak,Janusz M. Bujnicki
NUCLEIC ACIDS RESEARCHno. W1 (2024): W368-W373
Zhichao Miao,Ryszard W. Adamiak,Maciej Antczak,Michal J. Boniecki,Janusz Bujnicki,Shi-Jie Chen,Clarence Yu Cheng,Yi Cheng,Fang-Chieh Chou,Rhiju Das,Nikolay Dokholyan,Feng Ding,Caleb Geniesse,Yangwei Jiang,Astha Joshi,Andrey Krokhotin,Marcin Magnus,Olivier Mailhot,Francois Major,Thomas H. Mann,Pawel Piatkowski,Radoslaw Pluta,Mariusz Popenda,Joanna Sarzynska,Lizhen Sun,Marta Szachniuk,Siqi Tian,Jian Wang,Jun Wang,Andrew M. Watkins,Jakub Wiedemann,Yi Xiao,Xiaojun Xu,Joseph D. Yesselman,Dong Zhang,Yi Zhang,Zhenzhen Zhang,Chenhan Zhao,Peinan Zhao,Yuanzhe Zhou,Tomasz Zok,Adriana Zyla,Aiming Ren,Robert T. Batey,Barbara L. Golden,Lin Huang,David M. Lilley,Yijin Liu,Dinshaw J. Patel,Eric Westhof
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作者统计
#Papers: 29
#Citation: 1055
H-Index: 14
G-Index: 23
Sociability: 5
Diversity: 2
Activity: 8
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合作机构
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