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个人简介
Our group at MIT aims to further our understanding of the human genome by computational integration of large-scale functional and comparative genomics datasets. (1) We use comparative genomics of multiple related species to recognize evolutionary signatures of protein-coding genes, RNA structures, microRNAs, regulatory motifs, and individual regulatory elements. (2) We use combinations of epigenetic modifications to define chromatin states associated with distinct functions, including promoter, enhancer, transcribed, and repressed regions, each with distinct functional properties. (3) We use dynamics of functional elements across many cell types to link regulatory regions to their target genes, predict activators and repressors, and cell type specific regulatory action. (4) We combine these evolutionary, chromatin, and activity signatures to dramatically expand the annotation of the non-coding genome, elucidate the regulatory circuitry of the human and fly genomes, and to revisit previously uncharacterized disease-associated variants, providing mechanistic insights into their likely molecular roles.
研究兴趣
论文共 461 篇作者统计合作学者相似作者
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Clinical & Experimental Metastasispp.1-17, (2024)
Brain, Behavior, & Immunity - Health (2024): 100743-100743
Nature Communicationsno. 1 (2024): 1-11
Karin Hrovatin, Amir Ali Moinfar,Luke Zappia, Alejandro Tejada Lapuerta,Ben Lengerich,Manolis Kellis,Fabian J Theis
bioRxiv : the preprint server for biology (2024)
S. Sebastian Pineda, Hyeseung Lee, Maria J. Ulloa-Navas, Raleigh M. Linville,Francisco J. Garcia, Kyriakitsa Galani, Erica Engelberg-Cook, Monica C. Castanedes,Brent E. Fitzwalter, Luc J. Pregent, Mahammad E. Gardashli, Michael DeTure,
Cell (2024)
Yaping Liu, Sarah C Reed, Christopher Lo,Atish D Choudhury,Heather A Parsons,Daniel G Stover, Gavin Ha, Gregory Gydush, Justin Rhoades, Denisse Rotem, Samuel Freeman, David Katz,
bioRxiv : the preprint server for biology (2024)
Eloi Schmauch, Johannes Ojanen, Kyriakitsa Galani,Juho Jalkanen, Kristiina Harju,Maija Hollmen, Hannu Kokki,Jarmo Gunn, Jari Halonen, Juha Hartikainen,Tuomas Kiviniemi, Pasi Tavi,
biorxiv(2024)
Jialin He, Lei Xiong, Shaohui Shi, Chengyu Li, Kexuan Chen, Qianchen Fang, Jiuhong Nan, Ke Ding, Jingyun Li,Yuanhui Mao,Carles A. Boix,Xinyang Hu,
biorxiv(2024)
Mitchell H. Murdock, Cheng-Yi Yang,Na Sun,Ping-Chieh Pao,Cristina Blanco-Duque,Martin C. Kahn, TaeHyun Kim,Nicolas S. Lavoie, Matheus B. Victor, Md Rezaul Islam, Fabiola Galiana,Noelle Leary,
Natureno. 8002 (2024): 149-156
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