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Manesh Shah

Oak Ridge National Laboratory, Oak Ridge, TN 37831, USA

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Functional Immune Deficiency Syndrome via Intestinal Infection in COVID-19

Erica T. Prates, Michael R. Garvin, Mirko Pavicic, Piet Jones,Manesh Shah, Christiane Alvarez,David Kainer, Omar Demerdash, B Kirtley Amos, Armin Geiger, John Pestian,Kang Jin

bioRxiv, pp.1-29, (2020)

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Network Modeling of Complex Data Sets

Piet Jones,Deborah Weighill,Manesh Shah,Sharlee Climer,Jeremy Schmutz,Avinash Sreedasyam,Gerald Tuskan,Daniel Jacobson

Methods of Molecular Biology, (2020): 197-215

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Potentially adaptive SARS-CoV-2 mutations discovered with novel spatiotemporal and explainable AI models

Michael R Garvin, Erica T Prates, Mirko Pavicic, Piet Jones, B Kirtley Amos, Armin Geiger,Manesh B Shah, Jared Streich, Joao Gabriel Felipe Machado Gazolla,David Kainer, Ashley Cliff, Jonathon Romero

Genome biology, no. 1 (2020): 304

WOSBibtex

Multi-Phenotype Association Decomposition: Unraveling Complex Gene-Phenotype Relationships

Deborah Weighill, Piet Jones, Carissa Bleker,Priya Ranjan,Manesh Shah,Nan Zhao,Madhavi Martin,Stephen DiFazio,David Macaya-Sanz,Jeremy Schmutz,Avinash Sreedasyam,Timothy Tschaplinski

Frontiers in genetics, (2019): 417

WOSBibtex

Finding New Cell Wall Regulatory Genes in Populus trichocarpa Using Multiple Lines of Evidence

Anna Furches,David Kainer,Deborah Weighill, Annabel Large, Piet Jones, Angelica M Walker, Jonathon Romero, Joao Gabriel Felipe Machado Gazolla, Wayne Joubert,Manesh Shah, Jared Streich,Priya Ranjan

Frontiers in plant science, (2019): 1249

WOSBibtex

Wavelet-Based Genomic Signal Processing for Centromere Identification and Hypothesis Generation

Deborah Weighill,David Macaya-Sanz,Stephen Paul DiFazio, Wayne Joubert,Manesh Shah,Jeremy Schmutz,Avinash Sreedasyam,Gerald Tuskan,Daniel Jacobson

Frontiers in Genetics, (2019)

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Pleiotropic and Epistatic Network-Based Discovery: Integrated Networks for Target Gene Discovery

Deborah Weighill, Piet Jones,Manesh Shah,Priya Ranjan,Wellington Muchero,Jeremy Schmutz,Avinash Sreedasyam,David Macaya-Sanz,Robert Sykes,Nan Zhao,Madhavi Z. Martin,Stephen DiFazio

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Pleiotropic and Epistatic Network-Based Discovery: Integrated Networks for Target Gene Discovery

Deborah A. Weighill,Deborah A. Weighill, Piet C. Jones, Piet C. Jones,Manesh B Shah,Priya Ranjan,Priya Ranjan,Wellington Muchero,Jeremy Schmutz,Avinash Sreedasyam,David Macaya-Sanz,Robert W. Sykes

Frontiers in Energy Research, (2018): 267997

Cited by2Bibtex

Improved growth rate in Clostridium thermocellum hydrogenase mutant via perturbed sulfur metabolism

Ranjita Biswas,Ranjita Biswas, Charlotte M. Wilson,Richard J. Giannone,Dawn M. Klingeman,Thomas Rydzak,Manesh B Shah,Robert L. Hettich,Steven D. Brown,Adam M. Guss

BIOTECHNOLOGY FOR BIOFUELS, no. 1 (2017): 6

Cited by3Bibtex

Improved growth rate in Clostridium thermocellum hydrogenase mutant via perturbed sulfur metabolism

Ranjita Biswas, Charlotte M Wilson,Richard J Giannone,Dawn M Klingeman,Thomas Rydzak,Manesh B Shah,Robert L Hettich,Steven D Brown,Adam M Guss

Biotechnology for biofuels, no. 1 (2017): 6

WOSBibtex

Characterization of Clostridium acetobutylicum Protein Interaction Net- work from Butanol Fermentation

Kumaran Sivagnanam,Manesh Shah,Robert L Hettich,Nathan C Verberkmoes,Mark Lefsrud

(2012)

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Coupling a Detergent Lysis/Cleanup Methodology with Intact Protein Fractionation for Enhanced Proteome Characterization

Robert L Hettich,Nathan C Verberkmoes,Manesh Shah,Ritin Sharma,Brian D Dill,Karuna Chourey

Journal of Proteome Research, (2012)

Cited by23Bibtex

Proteomic analysis of Clostridium acetobutylicumin butanol production from lignocellulosic biomass

Kumaran Sivagnanam,Vijaya G S Raghavan,Manesh Shah,Nathan C Verberkmoes,Robert L Hettich,Mark G Lefsrud

BMC Proceedings, no. S7 (2011): P176

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Proteomics reveals a core molecular response of Pseudomonas putida F1 to acute chromate challenge

Dorothea K Thompson,Karuna Chourey,Gene S Wickham,Stephanie B Thieman,Nathan C VerBerkmoes,Bing Zhang,Andrea T McCarthy,Matt A Rudisill,Manesh Shah,Robert L Hettich

BMC Genomics, no. 1 (2010): 311-16

Cited by110WOSBibtex

Computational Prediction and Experimental Validation of Signal Peptide Cleavages in the Extracellular Proteome of a Natural Microbial Community

Brian K. Erickson,Ryan S. Mueller,Nathan C. VerBerkmoes,Manesh Shah,Steven W. Singer,Michael P. Thelen,Jillian F. Banfield,Robert L. Hettich

Journal of Proteome Research, no. 5 (2010): 2148-2159

Cited by20WOSBibtex

Integrating experimental and computational approaches for the proteogenomic characterizations of microbial communities

Robert L. Hettich,Alison L. Russell,Nathan C VerBerkmoes,Manesh Shah,Claire Fraser-Liggett,Janet K. Jansson

BMC Bioinformatics, no. Suppl 4 (2010): 6-1

Cited by52EIBibtex

Comparative temporal proteomics of a response regulator (SO2426)-deficient strain and wild-type Shewanella oneidensis MR-1 during chromate transformation

Karuna Chourey,Melissa R Thompson,Manesh Shah,Bing Zhang,Nathan C Verberkmoes,Dorothea K Thompson,Robert L Hettich

Journal of proteome research, no. 1 (2009): 59-71

Cited by22WOSBibtex

Shotgun metaproteomics of the human distal gut microbiota

Nathan C Verberkmoes,Alison L Russell,Manesh Shah,Adam Godzik,Magnus Rosenquist,Jonas Halfvarson,Mark G Lefsrud,Juha Apajalahti,Curt Tysk,Robert L Hettich,Janet K Jansson

The ISME journal, no. 2 (2009): 179-189

Cited by424WOSNATUREBibtex

Community genomic and proteomic analysis of chemoautotrophic, iron-oxidizing "Leptospirillum rubarum" (Group II) and Leptospirillum ferrodiazotrophum (Group III) in acid mine drainage biofilms

Daniela S Aliaga Goltsman,Vincent J Denef, Stephen W Singer,Nathan C Verberkmoes,Mark Lefsrud,Ryan Mueller,G J Dick,Christine L Sun,Korin E Wheeler, Adam Zelma,Brett J Baker,Loren Hauser

Applied Microbiology and Biotechnology, (2009)

Cited by38Bibtex

Influence of geochemistry and biology on community protein expression within a chemoautotropic biofilm

Ryan Mueller,Vincent J Denef,Linda H Kalnejais,Paul Wilmes,Brian C Thomas,Manesh Shah,Robert L Hettich,Nathan C Verberkmoes,Jillian F Banfield

(2009)

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