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Manesh Shah

Oak Ridge National Laboratory, Oak Ridge, TN 37831, USA

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Functional Immune Deficiency Syndrome via Intestinal Infection in COVID-19

Erica T. Prates, Michael R. Garvin, Mirko Pavicic, Piet Jones,Manesh Shah, Christiane Alvarez,David Kainer, Omar Demerdash, B Kirtley Amos, Armin Geiger, John Pestian,Kang Jin

bioRxiv, pp.1-29, (2020)

Bibtex

Wavelet-Based Genomic Signal Processing for Centromere Identification and Hypothesis Generation

Deborah Weighill,David Macaya-Sanz,Stephen Paul DiFazio, Wayne Joubert,Manesh Shah,Jeremy Schmutz,Avinash Sreedasyam,Gerald Tuskan,Daniel Jacobson

Frontiers in Genetics, (2019)

WOSBibtex

Finding New Cell Wall Regulatory Genes in Populus trichocarpa Using Multiple Lines of Evidence

Anna Furches,David Kainer,Deborah Weighill, Annabel Large, Piet Jones, Angelica M Walker, Jonathon Romero, Joao Gabriel Felipe Machado Gazolla, Wayne Joubert,Manesh Shah, Jared Streich,Priya Ranjan

Frontiers in plant science, (2019): 1249

WOSBibtex

Multi-Phenotype Association Decomposition: Unraveling Complex Gene-Phenotype Relationships

Deborah Weighill, Piet Jones, Carissa Bleker,Priya Ranjan,Manesh Shah,Nan Zhao,Madhavi Martin,Stephen DiFazio,David Macaya-Sanz,Jeremy Schmutz,Avinash Sreedasyam,Timothy Tschaplinski

Frontiers in genetics, (2019): 417

WOSBibtex

Pleiotropic and Epistatic Network-Based Discovery: Integrated Networks for Target Gene Discovery

Deborah Weighill, Piet Jones,Manesh Shah,Priya Ranjan,Wellington Muchero,Jeremy Schmutz,Avinash Sreedasyam,David Macaya-Sanz,Robert Sykes,Nan Zhao,Madhavi Z. Martin,Stephen DiFazio

Bibtex

Pleiotropic and Epistatic Network-Based Discovery: Integrated Networks for Target Gene Discovery

Deborah A. Weighill,Deborah A. Weighill, Piet C. Jones, Piet C. Jones,Manesh B Shah,Priya Ranjan,Priya Ranjan,Wellington Muchero,Jeremy Schmutz,Avinash Sreedasyam,David Macaya-Sanz,Robert W. Sykes

Frontiers in Energy Research, (2018): 267997

Cited by2Bibtex

Improved growth rate in Clostridium thermocellum hydrogenase mutant via perturbed sulfur metabolism

Ranjita Biswas,Ranjita Biswas, Charlotte M. Wilson,Richard J. Giannone,Dawn M. Klingeman,Thomas Rydzak,Manesh B Shah,Robert L. Hettich,Steven D. Brown,Adam M. Guss

Biotechnology for Biofuels, no. 1 (2017): 6

Cited by3Bibtex

Improved growth rate in Clostridium thermocellum hydrogenase mutant via perturbed sulfur metabolism

Ranjita Biswas, Charlotte M Wilson,Richard J Giannone,Dawn M Klingeman,Thomas Rydzak,Manesh B Shah,Robert L Hettich,Steven D Brown,Adam M Guss

Biotechnology for biofuels, no. 1 (2017): 6

WOSBibtex

Characterization of Clostridium acetobutylicum Protein Interaction Net- work from Butanol Fermentation

Kumaran Sivagnanam,Manesh Shah,Robert L Hettich,Nathan C Verberkmoes,Mark Lefsrud

(2012)

Bibtex

Coupling a Detergent Lysis/Cleanup Methodology with Intact Protein Fractionation for Enhanced Proteome Characterization

Robert L Hettich,Nathan C Verberkmoes,Manesh Shah,Ritin Sharma,Brian D Dill,Karuna Chourey

Journal of Proteome Research, (2012)

Cited by23Bibtex

Proteomic analysis of Clostridium acetobutylicumin butanol production from lignocellulosic biomass

Kumaran Sivagnanam,Vijaya G S Raghavan,Manesh Shah,Nathan C Verberkmoes,Robert L Hettich,Mark G Lefsrud

BMC Proceedings, no. S7 (2011): P176

Bibtex

Computational Prediction and Experimental Validation of Signal Peptide Cleavages in the Extracellular Proteome of a Natural Microbial Community

Brian K. Erickson,Ryan S. Mueller,Nathan C. VerBerkmoes,Manesh Shah,Steven W. Singer,Michael P. Thelen,Jillian F. Banfield,Robert L. Hettich

Journal of Proteome Research, no. 5 (2010): 2148-2159

Cited by20WOSBibtex

Proteomics reveals a core molecular response of Pseudomonas putida F1 to acute chromate challenge

Dorothea K Thompson,Karuna Chourey,Gene S Wickham,Stephanie B Thieman,Nathan C VerBerkmoes,Bing Zhang,Andrea T McCarthy,Matt A Rudisill,Manesh Shah,Robert L Hettich

BMC Genomics, no. 1 (2010): 311-16

Cited by110WOSBibtex

Integrating experimental and computational approaches for the proteogenomic characterizations of microbial communities

Robert L. Hettich,Alison L. Russell,Nathan C VerBerkmoes,Manesh Shah,Claire Fraser-Liggett,Janet K. Jansson

BMC Bioinformatics, no. Suppl 4 (2010): 6-1

Cited by52EIBibtex

Shotgun metaproteomics of the human distal gut microbiota

Nathan C Verberkmoes,Alison L Russell,Manesh Shah,Adam Godzik,Magnus Rosenquist,Jonas Halfvarson,Mark G Lefsrud,Juha Apajalahti,Curt Tysk,Robert L Hettich,Janet K Jansson

The ISME journal, no. 2 (2009): 179-189

Cited by424WOSNATUREBibtex

Comparative temporal proteomics of a response regulator (SO2426)-deficient strain and wild-type Shewanella oneidensis MR-1 during chromate transformation

Karuna Chourey,Melissa R Thompson,Manesh Shah,Bing Zhang,Nathan C Verberkmoes,Dorothea K Thompson,Robert L Hettich

Journal of proteome research, no. 1 (2009): 59-71

Cited by22WOSBibtex

Community genomic and proteomic analysis of chemoautotrophic, iron-oxidizing "Leptospirillum rubarum" (Group II) and Leptospirillum ferrodiazotrophum (Group III) in acid mine drainage biofilms

Daniela S Aliaga Goltsman,Vincent J Denef, Stephen W Singer,Nathan C Verberkmoes,Mark Lefsrud,Ryan Mueller,G J Dick,Christine L Sun,Korin E Wheeler, Adam Zelma,Brett J Baker,Loren Hauser

Applied Microbiology and Biotechnology, (2009)

Cited by38Bibtex

Influence of geochemistry and biology on community protein expression within a chemoautotropic biofilm

Ryan Mueller,Vincent J Denef,Linda H Kalnejais,Paul Wilmes,Brian C Thomas,Manesh Shah,Robert L Hettich,Nathan C Verberkmoes,Jillian F Banfield

(2009)

Bibtex

Cytochrome 572 is a conspicuous membrane protein with iron oxidation activity purified directly from a natural acidophilic microbial community

Chris Jeans,Steven W Singer,Clara S Chan,Nathan C Verberkmoes,Manesh Shah,Robert L Hettich,Jillian F Banfield,Michael P Thelen

The ISME journal, no. 5 (2008): 542-550

Cited by54WOSNATUREBibtex

Community proteogenomics highlights microbial strain-variant protein expression within activated sludge performing enhanced biological phosphorus removal

Paul Wilmes,Anders F Andersson,Mark G Lefsrud,Margaret Wexler,Manesh Shah,Bing Zhang,Robert L Hettich,Philip L Bond,Nathan C VerBerkmoes,Jillian F Banfield

The ISME journal, no. 8 (2008): 853-864

Cited by156WOSNATUREBibtex

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